Lymphoma Biology and Survival / Applied Tumor Genomics / University of Helsinki

Sirpa Leppä
sirpa.leppa@helsinki.fi

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Dataset ID	Description	Technology	Samples
EGAD00001009337	Low-pass whole-genome sequencing of pretherapy lymphoma cfDNA and targeted sequencing of cfDNA, tumor tissue and whole-blood samples of NLG-LBC-05 patient samples and cfDNA of nine subjects with no known cancer. Hybrid capture target enrichment; panel target and sequencing information provided in PMID:34932792. FASTQ files provided for targeted sequencing, separate sequencing runs per sample noted with prefix "run" if applicable. Sequences from DTX1 and KLHL6 targets are advised to be excluded from analyses due to PCR/plasmid contaminants of in-house origin.	Illumina HiSeq 2500 Illumina NovaSeq 6000	391