Data Access Commitee for skin scRNA-seq

Yang Li
yang.li@helmholtz-hzi.de

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Dataset ID	Description	Technology	Samples
EGAD00001010106	This dataset contains scRNA-seq fastq files to the paper entitled "Single-cell profiles reveal distinctive immune response in atopic dermatitis in contrast to psoriasis". The details of experiment setup was described in the paper.	NextSeq 500	12
EGAD50000000037	Genotype measured by Illumina GSA		1063
EGAD50000000197	We generated single-cell transcriptomics, single-nuclei chromatin accessibility, CITE-seq and Multiomics of patients with PML. Pools are genetically multiplexed across donors, genotypic variation is included in this dataset to enable demultiplexing.	Illumina NovaSeq 6000	14
EGAD50000000198	We performed multi-omics profiling of 38 Crohn's disease and Ulcerative colitis patients across several stimulations (RPMI, LPS, Salmonella, in total 80 samples). Nuclei were profiled using the 10X Multiome protocol which offers paired RNA+ATAC from the same nucleus (e.g. shared barcodes). Per library, the ATAC (I1, R1, R2, R3 reads) and RNA (I1, I2, R1, R2 reads) are provided. Pools are genetically multiplexed across donors. Genotype files are provided to allow genetic demultiplexing.	Illumina NovaSeq 6000	20