Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sections
Advamced Visium Spatial Gene Expression assay for FFPE tissues with human and SARS-CoV-2 whole transcriptome (WT) information at a 55 µm resolution. The dataset consists of 13 tissue sections from 5 patient lung tissue samples, 3 from COVID-19 patients and 2 from control patients.
- 13 samples
- DAC: EGAC00001002635
- Technology: Illumina NovaSeq 6000
No restriction DUO label
DUO:0000004 (no restriction): This consent code primary category indicates there is no restriction on use.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001006186 | Other |
- Title and abstract updated as per manuscript's latest version.
- Dataset Released
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00006139836 | fastq.gz | 475.8 MB | ||
| EGAF00006139837 | fastq.gz | 698.4 MB | ||
| EGAF00006139838 | fastq.gz | 694.5 MB | ||
| EGAF00006139839 | fastq.gz | 1.0 GB | ||
| EGAF00006139840 | fastq.gz | 1.5 GB | ||
| EGAF00006139841 | fastq.gz | 2.1 GB | ||
| EGAF00006139842 | fastq.gz | 259.6 MB | ||
| EGAF00006139843 | fastq.gz | 385.6 MB | ||
| EGAF00006139844 | fastq.gz | 1.8 GB | ||
| EGAF00006139845 | fastq.gz | 2.5 GB | ||
| EGAF00006139846 | fastq.gz | 1.5 GB | ||
| EGAF00006139847 | fastq.gz | 2.1 GB | ||
| EGAF00006139848 | fastq.gz | 1.4 GB | ||
| EGAF00006139849 | fastq.gz | 2.1 GB | ||
| EGAF00006139850 | fastq.gz | 573.1 MB | ||
| EGAF00006139851 | fastq.gz | 829.5 MB | ||
| EGAF00006139852 | fastq.gz | 1.8 GB | ||
| EGAF00006139853 | fastq.gz | 2.5 GB | ||
| EGAF00006139854 | fastq.gz | 260.5 MB | ||
| EGAF00006139855 | fastq.gz | 387.5 MB | ||
| EGAF00006139856 | fastq.gz | 943.3 MB | ||
| EGAF00006139857 | fastq.gz | 1.3 GB | ||
| EGAF00006139858 | fastq.gz | 572.8 MB | ||
| EGAF00006139859 | fastq.gz | 832.8 MB | ||
| EGAF00006139860 | fastq.gz | 1.6 GB | ||
| EGAF00006139861 | fastq.gz | 2.5 GB | ||
| EGAF00006139862 | fastq.gz | 475.3 MB | ||
| EGAF00006139863 | fastq.gz | 696.4 MB | ||
| EGAF00006139864 | fastq.gz | 1.6 GB | ||
| EGAF00006139865 | fastq.gz | 2.5 GB | ||
| EGAF00006139866 | fastq.gz | 367.6 MB | ||
| EGAF00006139867 | fastq.gz | 543.9 MB | ||
| EGAF00006139868 | fastq.gz | 697.7 MB | ||
| EGAF00006139869 | fastq.gz | 1.0 GB | ||
| EGAF00006139870 | fastq.gz | 531.4 MB | ||
| EGAF00006139871 | fastq.gz | 776.6 MB | ||
| EGAF00006139872 | fastq.gz | 695.2 MB | ||
| EGAF00006139873 | fastq.gz | 1.0 GB | ||
| EGAF00006139874 | fastq.gz | 1.4 GB | ||
| EGAF00006139875 | fastq.gz | 2.1 GB | ||
| EGAF00006139876 | fastq.gz | 1.8 GB | ||
| EGAF00006139877 | fastq.gz | 2.5 GB | ||
| EGAF00006139878 | fastq.gz | 446.6 MB | ||
| EGAF00006139879 | fastq.gz | 641.8 MB | ||
| EGAF00006139880 | fastq.gz | 366.5 MB | ||
| EGAF00006139881 | fastq.gz | 542.6 MB | ||
| EGAF00006139882 | fastq.gz | 1.5 GB | ||
| EGAF00006139883 | fastq.gz | 2.1 GB | ||
| EGAF00006139884 | fastq.gz | 697.9 MB | ||
| EGAF00006139885 | fastq.gz | 1.0 GB | ||
| EGAF00006139886 | fastq.gz | 448.7 MB | ||
| EGAF00006139887 | fastq.gz | 647.6 MB | ||
| EGAF00006139888 | fastq.gz | 1.8 GB | ||
| EGAF00006139889 | fastq.gz | 2.4 GB | ||
| EGAF00006139890 | fastq.gz | 571.7 MB | ||
| EGAF00006139891 | fastq.gz | 830.7 MB | ||
| EGAF00006139892 | fastq.gz | 960.9 MB | ||
| EGAF00006139893 | fastq.gz | 1.3 GB | ||
| EGAF00006139894 | fastq.gz | 260.5 MB | ||
| EGAF00006139895 | fastq.gz | 386.3 MB | ||
| EGAF00006139896 | fastq.gz | 959.7 MB | ||
| EGAF00006139897 | fastq.gz | 1.3 GB | ||
| EGAF00006139898 | fastq.gz | 1.8 GB | ||
| EGAF00006139899 | fastq.gz | 2.4 GB | ||
| EGAF00006139900 | fastq.gz | 446.9 MB | ||
| EGAF00006139901 | fastq.gz | 645.3 MB | ||
| EGAF00006139902 | fastq.gz | 366.0 MB | ||
| EGAF00006139903 | fastq.gz | 542.2 MB | ||
| EGAF00006139904 | fastq.gz | 366.9 MB | ||
| EGAF00006139905 | fastq.gz | 544.4 MB | ||
| EGAF00006139906 | fastq.gz | 478.5 MB | ||
| EGAF00006139907 | fastq.gz | 700.3 MB | ||
| EGAF00006139908 | fastq.gz | 962.5 MB | ||
| EGAF00006139909 | fastq.gz | 1.3 GB | ||
| EGAF00006139910 | fastq.gz | 1.8 GB | ||
| EGAF00006139911 | fastq.gz | 2.4 GB | ||
| EGAF00006139912 | fastq.gz | 476.1 MB | ||
| EGAF00006139913 | fastq.gz | 697.2 MB | ||
| EGAF00006139914 | fastq.gz | 533.0 MB | ||
| EGAF00006139915 | fastq.gz | 778.8 MB | ||
| EGAF00006139916 | fastq.gz | 450.3 MB | ||
| EGAF00006139917 | fastq.gz | 649.0 MB | ||
| EGAF00006139918 | fastq.gz | 531.5 MB | ||
| EGAF00006139919 | fastq.gz | 778.0 MB | ||
| EGAF00006139920 | fastq.gz | 1.5 GB | ||
| EGAF00006139921 | fastq.gz | 2.1 GB | ||
| EGAF00006139922 | fastq.gz | 570.5 MB | ||
| EGAF00006139923 | fastq.gz | 827.7 MB | ||
| EGAF00006139924 | fastq.gz | 261.1 MB | ||
| EGAF00006139925 | fastq.gz | 387.3 MB | ||
| EGAF00006139926 | fastq.gz | 535.7 MB | ||
| EGAF00006139927 | fastq.gz | 782.0 MB | ||
| EGAF00006139928 | fastq.gz | 1.8 GB | ||
| EGAF00006139929 | fastq.gz | 2.5 GB | ||
| EGAF00006139930 | fastq.gz | 1.8 GB | ||
| EGAF00006139931 | fastq.gz | 2.4 GB | ||
| 96 Files (105.9 GB) | ||||