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Linked-Read Medulloblastoma data

Linked-read data from 25 medulloblastomas and their matching control. Dataset consists of 25 group 4 medulloblastomas (G4) as well as 2 sonic hedgehog medulloblastomas (SHH-MB) samples and 2 group 3 medulloblastomas. The data consists of BAM files generated by the LongRanger pipeline developed by 10x Genomics

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Please see the full policy which outlines the terms and conditions under which access to the managed datasets can be granted

Developmental & Stem Cell Biology Program Hospital for Sick Children Data Access Committee DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to the genotype/expression array/sequence data generated by the Developmental & Stem Cell Biology Program, Hospital for Sick Children Data Access Committee. In signing this agreement, you are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly. Definitions: Project team means Developmental & Stem Cell Biology Program, Hospital for Sick Children, Toronto, Canada. Data means all and any human genetic data obtained from the Project team. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the Data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to abide by the terms outlined in the Project team 'Publications Policy' as set out in Schedule 1. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Project team. Suitable wording is provided in the Publications Policy given in Schedule 1. 10. You accept that the Project team, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You agree that upon the request of The Hospital for Sick Children You will securely return or destroy the Data and provide a written confirmation of the manner of destruction in a form acceptable to The Hospital for Sick Children. 15. You accept that it may be necessary for the Project team or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Project team or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 16. You agree that you will submit a report to The Developmental & Stem Cell Biology, Hospital for Sick Children Data Access Committee, if requested, on completion of the agreed purpose. The Developmental & Stem Cell Biology, Hospital for Sick Children Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 17. You accept that the Data is protected by and subject to international laws and that You are responsible for ensuring compliance with any such applicable law. The Developmental & Stem Cell Biology, Hospital for Sick Children Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 18. This agreement shall be construed, interpreted and governed by the laws of Canada. The place of jurisdiction shall be Ontario. SCHEDULE 1 Publications Policy Authors who use data from the project must acknowledge Dr. Michael D. Taylor using the following wording "This study makes use of data generated by The Developmental & Stem Cell Biology Program, Hospital for Sick Children. and cite the relevant primary publication. Users should note that the Project team bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Project team.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007064 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008066183 bam 90.2 GB
EGAF00008066184 bam 91.4 GB
EGAF00008066202 bam 74.9 GB
EGAF00008066203 bam 81.7 GB
EGAF00008066204 bam 83.3 GB
EGAF00008066205 bam 80.8 GB
EGAF00008066206 bam 78.1 GB
EGAF00008066207 bam 76.8 GB
EGAF00008066208 bam 86.3 GB
EGAF00008066209 bam 71.0 GB
EGAF00008066210 bam 101.2 GB
EGAF00008066211 bam 96.9 GB
EGAF00008066212 bam 96.5 GB
EGAF00008066213 bam 93.0 GB
EGAF00008066214 bam 88.7 GB
EGAF00008066215 bam 99.8 GB
EGAF00008066216 bam 101.5 GB
EGAF00008066217 bam 95.7 GB
EGAF00008066228 bam 87.4 GB
EGAF00008066229 bam 84.3 GB
EGAF00008066230 bam 92.7 GB
EGAF00008066231 bam 93.8 GB
EGAF00008066232 bam 97.0 GB
EGAF00008066233 bam 100.0 GB
EGAF00008066234 bam 96.2 GB
EGAF00008066235 bam 97.9 GB
EGAF00008066236 bam 87.7 GB
EGAF00008066237 bam 85.0 GB
EGAF00008066238 bam 71.5 GB
EGAF00008066239 bam 94.2 GB
EGAF00008066240 bam 97.9 GB
EGAF00008066241 bam 105.0 GB
EGAF00008066242 bam 78.7 GB
EGAF00008066243 bam 87.5 GB
EGAF00008066244 bam 81.8 GB
EGAF00008066245 bam 89.0 GB
EGAF00008066246 bam 54.0 GB
EGAF00008066247 bam 208.3 GB
EGAF00008066248 bam 116.5 GB
EGAF00008066249 bam 207.9 GB
EGAF00008066250 bam 94.5 GB
EGAF00008066251 bam 90.6 GB
EGAF00008066252 bam 73.7 GB
EGAF00008066253 bam 185.6 GB
EGAF00008066254 bam 89.9 GB
EGAF00008066255 bam 56.2 GB
EGAF00008066256 bam 80.5 GB
EGAF00008066257 bam 51.3 GB
EGAF00008066258 bam 104.7 GB
EGAF00008066259 bam 186.1 GB
50 Files (4.8 TB)