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CTCF ChIP-seq of human acute leukemias

CTCF ChIP-seq of 39 primary samples derived from human acute leukemias, namely AML, T-ALL and mixed myeloid/lymphoid leukemias with CpG Island Methylator Phenotype (CIMP).

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Data access policy of the EMC-HEMA-AML consortium for adult acute myeloid leukemia data

THE EMC-HEMA-AML CONSORTIUM DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to the genotype data generated by the EMC-HEMA-AML (part of the ERASMUSMC-HEMA consortium) consortium. In signing this agreement, You are agreeing to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your” shall be construed accordingly. Definitions: Consortium means the EMC-HEMA-AML Consortium comprised out of the following members: Dr. Bas Wouters, Dr. Ruud Delwel, Roger Mulet-Lázaro, Dr. Mathijs A. Sanders, Dr. Peter J.M. Valk, Data means all and any human genetic data obtained from the Consortium. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled. Acute Myeloid Leukemia is hereafter referred to within the agreement as "AML". Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree not to use the data from the adult ALL cohort or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevant access committees. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. The relevant access committess will see to it that the Data is not used in publications outside the project described in the original application. 7. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 8. You agree to abide by the terms outlined in the Consortium 'Publications Policy' as set out in Schedule 1. 9. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Consortium and the relevant primary collectors and their funders. Suitable wording is provided in the Publications Policy given in Schedule 1. 10. You accept that the Consortium, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 11. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 12. You recognize that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 13. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 14. You accept that it may be necessary for the Consortium or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Consortium or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 15. You agree that you will submit a report to the Consortium Data Access Committee, if requested, on completion of the agreed purpose. The Consortium Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 16. You accept that the Data is protected by and subject to international laws, and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 17. This agreement shall be construed, interpreted and governed by the laws of the Netherlands and shall be subject to the non-exclusive jurisdiction of the Dutch courts. SCHEDULE 1 Publications Policy The primary purpose of the EMC-HEMA-AML Consortium is to accelerate efforts to identify genome sequence variants influencing major causes of human morbidity and mortality, through implementation and analysis of large-scale genome-wide association studies. Additional objectives include the development and validation of informatics and analytical solutions appropriate to the scale and nature of the project, as well as use of the data generated to answer important methodological and biological questions relevant to association studies in general, and in the Netherlands in particular. The Consortium anticipates that data generated from the project will be used by others, such as required for developing new analytical methods, in understanding patterns of polymorphism and in guiding selection of markers to map genes involved in specific diseases. Authors who use data from the project must acknowledge the EMC-HEMA-AML using the following wording "This study makes use of data generated by the EMC-HEMA-AML Consortium. Cite the relevant primary EMC-HEMA-AML publication”. Users should note that the Consortium bears no responsibility for the further analysis or interpretation of these data, over and above that published by the Consortium.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007094 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008107360 bam 5.5 GB
EGAF00008107361 bam 4.7 GB
EGAF00008107362 bam 4.8 GB
EGAF00008107363 bam 5.3 GB
EGAF00008107364 bam 4.7 GB
EGAF00008107365 bam 4.8 GB
EGAF00008107366 bam 3.1 GB
EGAF00008107367 bam 4.4 GB
EGAF00008107368 bam 4.3 GB
EGAF00008107369 bam 4.8 GB
EGAF00008107370 bam 3.8 GB
EGAF00008107371 bam 4.2 GB
EGAF00008107372 bam 8.3 GB
EGAF00008107373 bam 5.3 GB
EGAF00008107374 bam 6.9 GB
EGAF00008107375 bam 7.4 GB
EGAF00008107376 bam 6.5 GB
EGAF00008107377 bam 10.9 GB
EGAF00008107378 bam 9.3 GB
EGAF00008107379 bam 10.7 GB
EGAF00008107380 bam 8.0 GB
EGAF00008107381 bam 5.5 GB
EGAF00008107382 bam 11.4 GB
EGAF00008107383 bam 13.5 GB
EGAF00008107384 bam 3.3 GB
EGAF00008107385 bam 3.3 GB
EGAF00008107386 bam 3.5 GB
EGAF00008107387 bam 7.6 GB
EGAF00008107388 bam 4.8 GB
EGAF00008107389 bam 2.8 GB
EGAF00008107390 bam 4.7 GB
EGAF00008107391 bam 13.0 GB
EGAF00008107392 bam 3.7 GB
EGAF00008107393 bam 5.3 GB
EGAF00008107394 bam 2.8 GB
EGAF00008107395 bam 3.2 GB
EGAF00008107396 bam 3.2 GB
EGAF00008107397 bam 2.9 GB
EGAF00008107398 bam 3.6 GB
EGAF00008107399 bam 3.4 GB
EGAF00008107400 bam 4.1 GB
EGAF00008107401 bam 4.7 GB
EGAF00008107402 bam 3.3 GB
EGAF00008107403 bam 3.2 GB
EGAF00008107404 bam 2.7 GB
EGAF00008107405 bam 3.5 GB
EGAF00008107406 bam 3.2 GB
EGAF00008107407 bam 4.6 GB
EGAF00008107408 bam 4.0 GB
EGAF00008107409 bam 3.3 GB
EGAF00008107410 bam 4.2 GB
EGAF00008107411 bam 5.2 GB
EGAF00008107412 bam 3.9 GB
EGAF00008107413 bam 5.3 GB
EGAF00008107414 bam 4.7 GB
EGAF00008107415 bam 4.2 GB
EGAF00008107416 bam 4.3 GB
EGAF00008107417 bam 8.9 GB
EGAF00008107418 bam 5.8 GB
EGAF00008107419 bam 3.8 GB
EGAF00008107420 bam 4.8 GB
EGAF00008107421 bam 4.8 GB
EGAF00008107422 bam 3.5 GB
EGAF00008107423 bam 2.9 GB
EGAF00008107424 bam 2.9 GB
EGAF00008107425 bam 5.4 GB
EGAF00008107426 bam 4.6 GB
EGAF00008107427 bam 2.9 GB
EGAF00008107428 bam 4.4 GB
EGAF00008107429 bam 4.3 GB
EGAF00008107430 bam 3.3 GB
EGAF00008107431 bam 6.1 GB
EGAF00008107432 bam 2.9 GB
EGAF00008107433 bam 3.0 GB
EGAF00008107434 bam 2.8 GB
EGAF00008107435 bam 3.2 GB
EGAF00008107438 bai 7.7 MB
EGAF00008107440 bai 8.1 MB
EGAF00008107441 bai 7.0 MB
EGAF00008107442 bai 6.8 MB
EGAF00008107443 bai 7.8 MB
EGAF00008107446 bai 6.6 MB
EGAF00008107447 bai 7.9 MB
EGAF00008107449 bai 7.0 MB
EGAF00008107450 bai 7.7 MB
EGAF00008107452 bai 8.0 MB
EGAF00008107453 bai 7.1 MB
EGAF00008107454 bai 7.9 MB
EGAF00008107456 bai 7.6 MB
EGAF00008107457 bai 8.2 MB
EGAF00008107459 bai 8.2 MB
EGAF00008107460 bai 7.8 MB
EGAF00008107462 bai 7.9 MB
EGAF00008107463 bai 7.9 MB
EGAF00008107464 bai 7.5 MB
EGAF00008107465 bai 7.1 MB
EGAF00008107466 bai 7.2 MB
EGAF00008107467 bai 7.5 MB
EGAF00008107469 bai 7.3 MB
EGAF00008107471 bai 7.1 MB
EGAF00008107472 bai 6.3 MB
EGAF00008107473 bai 7.2 MB
EGAF00008107475 bai 7.9 MB
EGAF00008107476 bai 7.3 MB
EGAF00008107478 bai 6.7 MB
EGAF00008107480 bai 7.0 MB
EGAF00008107481 bai 6.8 MB
EGAF00008107483 bai 7.4 MB
EGAF00008107484 bai 7.9 MB
EGAF00008107485 bai 7.0 MB
EGAF00008107489 bai 7.7 MB
EGAF00008107490 bai 6.7 MB
EGAF00008107491 bai 7.0 MB
EGAF00008107492 bai 7.8 MB
EGAF00008107493 bai 7.3 MB
EGAF00008107494 bai 6.5 MB
EGAF00008107495 bai 7.5 MB
EGAF00008107497 bai 7.5 MB
EGAF00008107498 bai 7.0 MB
EGAF00008107501 bai 8.0 MB
EGAF00008107502 bai 7.1 MB
EGAF00008107503 bai 6.6 MB
EGAF00008107504 bai 7.6 MB
EGAF00008107505 bai 7.5 MB
EGAF00008107506 bai 7.6 MB
EGAF00008107507 bai 7.1 MB
EGAF00008107509 bai 6.6 MB
EGAF00008107510 bai 7.5 MB
EGAF00008107512 bai 7.4 MB
EGAF00008107513 bai 7.3 MB
EGAF00008107514 bai 7.3 MB
EGAF00008107515 bai 8.0 MB
EGAF00008107516 bai 7.5 MB
EGAF00008107517 bai 8.3 MB
EGAF00008107519 bai 6.6 MB
EGAF00008107522 bai 6.8 MB
EGAF00008107523 bai 7.8 MB
EGAF00008107524 bai 7.7 MB
EGAF00008107526 bai 7.5 MB
EGAF00008107527 bai 6.7 MB
EGAF00008107528 bai 8.0 MB
EGAF00008107529 bai 6.8 MB
EGAF00008107530 bai 8.4 MB
EGAF00008107531 bai 7.0 MB
EGAF00008107532 bai 7.7 MB
EGAF00008107533 bai 7.8 MB
EGAF00008107535 bai 7.1 MB
EGAF00008107537 bai 7.4 MB
EGAF00008107538 bai 7.4 MB
EGAF00008107540 bai 6.7 MB
EGAF00008107542 bai 7.1 MB
EGAF00008107544 bai 7.9 MB
152 Files (378.3 GB)