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Bulk RNA sequencing of SARC PDOs and UroCa PDOs.

This dataset contains raw FASTQ files from bulk RNA sequencing of SarBC-01 organoids at different passages (Passage 6, Pssage 19, Passage 59), UroBC-01 organoids (Passage 70), UroBC-16 organoids (Passage 19) and UroBC-22 organoids (Passage 8). RNA was isolated using the Quick-DNA/RNA Miniprep kit (Zymo Research, Irvine, CA, USA, D7001) and subjected to bulk RNA sequencing. TruSeq Stranded mRNA kit (Illumina, 20020594) was used for the library preparation according to manufacturer’s guidelines. Sequencing was performed on Illumina NovaSeq 6000 using paired-end 100-bp reads.

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Data Access Policy of Datasets controlled by MF-DAC

ATTENTION: Please check the following policy and the documents/information to provide in order to get access to the requeted datasets: You can find the governing policy on Zenodo under the link: https://zenodo.org/records/10014705 Please provide all information as requested in the document to the MF-DAC. Additionally, you can find more information about the Data Access Committee of the Medical Faculty of the University of Basel (MF-DAC) under the following link on Zenodo: https://zenodo.org/records/10137776

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007430 Cancer Genomics
  • Updated policy to match request of MF-DAC.
  • Updated policy to match request of MF-DAC.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008157577 fastq.gz 2.6 GB
EGAF00008157578 fastq.gz 2.7 GB
EGAF00008157579 fastq.gz 2.5 GB
EGAF00008157580 fastq.gz 2.6 GB
EGAF00008157581 fastq.gz 2.5 GB
EGAF00008157582 fastq.gz 2.6 GB
EGAF00008157583 fastq.gz 2.3 GB
EGAF00008157584 fastq.gz 2.4 GB
EGAF00008157585 fastq.gz 2.8 GB
EGAF00008157586 fastq.gz 2.9 GB
EGAF00008157587 fastq.gz 2.5 GB
EGAF00008157588 fastq.gz 2.6 GB
12 Files (31.1 GB)