Whole exome sequencing of SarBC-01- and UroBC-01-related samples.
This dataset contains raw FASTQ files from DNA of SarBC-01-related samples (SarBC-01 patient Germline, SarBC-01 patient Urothelial tumor, SarBC-01 patient Sarcomatoid tumor, SarBC-01 Passage 6 organoids, SarBC-01 Passage 20 organoids) and UroBC-01 related samples (UroBC-01 patient Germline, UroBC-01 patient Urothelial tumor, UroBC-01 Passage 19 organoids, UroBC-01 Passage 6 organoids). DNA was extracted from FFPE tissue, using RecoverAll RNA/DNA extraction kit (Invitrogen, Carlsbad, CA, USA, AM1975) followed by incubation with Uracil-DNA Glycosylase, and fresh or flash frozen tissue, using Quick-DNA/RNA Miniprep kit (Zymo Research, Irvine, CA, USA, D7001). Twist Human Core Exome + RefSeq + Mito-Panel kit (Twist Bioscience, 102031) was used for the whole exome capturing. Sequencing was performed on Illumina NovaSeq 6000 using paired-end 100-bp reads.
- 9 samples
- DAC: EGAC00001002981
- Technology: Illumina NovaSeq 6000
Data Access Policy of Datasets controlled by MF-DAC
ATTENTION: Please check the following policy and the documents/information to provide in order to get access to the requeted datasets: You can find the governing policy on Zenodo under the link: https://zenodo.org/records/10014705 Please provide all information as requested in the document to the MF-DAC. Additionally, you can find more information about the Data Access Committee of the Medical Faculty of the University of Basel (MF-DAC) under the following link on Zenodo: https://zenodo.org/records/10137776
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007430 | Cancer Genomics |
- Updated policy to match request of MF-DAC.
- Updated policy to match request of MF-DAC.
- Dataset Released
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008157593 | fastq.gz | 3.2 GB | ||
| EGAF00008157594 | fastq.gz | 3.3 GB | ||
| EGAF00008157595 | fastq.gz | 4.2 GB | ||
| EGAF00008157596 | fastq.gz | 4.3 GB | ||
| EGAF00008157597 | fastq.gz | 3.7 GB | ||
| EGAF00008157598 | fastq.gz | 3.8 GB | ||
| EGAF00008157599 | fastq.gz | 4.4 GB | ||
| EGAF00008157600 | fastq.gz | 4.5 GB | ||
| EGAF00008157601 | fastq.gz | 4.3 GB | ||
| EGAF00008157602 | fastq.gz | 4.4 GB | ||
| EGAF00008157603 | fastq.gz | 4.2 GB | ||
| EGAF00008157604 | fastq.gz | 4.4 GB | ||
| EGAF00008157605 | fastq.gz | 4.6 GB | ||
| EGAF00008157606 | fastq.gz | 4.6 GB | ||
| EGAF00008157607 | fastq.gz | 4.1 GB | ||
| EGAF00008157608 | fastq.gz | 4.2 GB | ||
| EGAF00008157609 | fastq.gz | 4.2 GB | ||
| EGAF00008157610 | fastq.gz | 4.3 GB | ||
| 18 Files (74.8 GB) | ||||