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Single-cell RNA and TCR sequencing of 37 PBMC pools of advanced HCC patients.

scRNAseq and scTCRseq of serial peripheral blood mononuclear cell (PBMC) samples (n=72) taken at various timepoints before and during treatment (Week 0 (W0), Week 3 (W3), Week 6 (W6)). PBMC samples were pooled together into 37 pools, loading 2 or three samples per lane in the 10X Genomics chip, in equal proportions, according to a pre-designed pooling matrix.

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VIB Policy for Data Access and Data Transfer

VIB Policy for Data Access and Data Transfer Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007547 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008243522 fastq.gz 5.8 GB
EGAF00008243523 fastq.gz 13.7 GB
EGAF00008243524 fastq.gz 9.6 GB
EGAF00008243525 fastq.gz 24.3 GB
EGAF00008243526 fastq.gz 10.2 GB
EGAF00008243527 fastq.gz 25.6 GB
EGAF00008243528 fastq.gz 4.7 GB
EGAF00008243529 fastq.gz 11.4 GB
EGAF00008243530 fastq.gz 3.1 GB
EGAF00008243531 fastq.gz 7.4 GB
EGAF00008243532 fastq.gz 10.0 GB
EGAF00008243533 fastq.gz 25.1 GB
EGAF00008243534 fastq.gz 4.1 GB
EGAF00008243535 fastq.gz 10.1 GB
EGAF00008243536 fastq.gz 9.3 GB
EGAF00008243537 fastq.gz 23.3 GB
EGAF00008243538 fastq.gz 7.2 GB
EGAF00008243539 fastq.gz 17.6 GB
EGAF00008243540 fastq.gz 5.3 GB
EGAF00008243541 fastq.gz 13.0 GB
EGAF00008243542 fastq.gz 694.2 MB
EGAF00008243543 fastq.gz 1.6 GB
EGAF00008243544 fastq.gz 2.7 GB
EGAF00008243545 fastq.gz 6.6 GB
EGAF00008243546 fastq.gz 4.2 GB
EGAF00008243547 fastq.gz 10.0 GB
EGAF00008243548 fastq.gz 4.0 GB
EGAF00008243549 fastq.gz 9.5 GB
EGAF00008243550 fastq.gz 5.5 GB
EGAF00008243551 fastq.gz 13.3 GB
EGAF00008243552 fastq.gz 6.1 GB
EGAF00008243553 fastq.gz 14.2 GB
EGAF00008243554 fastq.gz 3.1 GB
EGAF00008243555 fastq.gz 7.5 GB
EGAF00008243556 fastq.gz 9.8 GB
EGAF00008243557 fastq.gz 23.5 GB
EGAF00008243558 fastq.gz 5.8 GB
EGAF00008243559 fastq.gz 13.6 GB
EGAF00008243560 fastq.gz 5.0 GB
EGAF00008243561 fastq.gz 11.7 GB
EGAF00008243562 fastq.gz 4.5 GB
EGAF00008243563 fastq.gz 10.6 GB
EGAF00008243564 fastq.gz 2.6 GB
EGAF00008243565 fastq.gz 6.4 GB
EGAF00008243566 fastq.gz 5.4 GB
EGAF00008243567 fastq.gz 12.8 GB
EGAF00008243568 fastq.gz 10.1 GB
EGAF00008243569 fastq.gz 25.0 GB
EGAF00008243570 fastq.gz 8.3 GB
EGAF00008243571 fastq.gz 20.8 GB
EGAF00008243572 fastq.gz 4.5 GB
EGAF00008243573 fastq.gz 10.8 GB
EGAF00008243574 fastq.gz 3.0 GB
EGAF00008243575 fastq.gz 7.3 GB
EGAF00008243576 fastq.gz 2.9 GB
EGAF00008243577 fastq.gz 7.2 GB
EGAF00008243578 fastq.gz 5.9 GB
EGAF00008243579 fastq.gz 13.9 GB
EGAF00008243580 fastq.gz 5.1 GB
EGAF00008243581 fastq.gz 12.2 GB
EGAF00008243582 fastq.gz 9.5 GB
EGAF00008243583 fastq.gz 24.1 GB
EGAF00008243584 fastq.gz 6.8 GB
EGAF00008243585 fastq.gz 16.0 GB
EGAF00008243586 fastq.gz 6.1 GB
EGAF00008243587 fastq.gz 14.0 GB
EGAF00008243588 fastq.gz 6.1 GB
EGAF00008243589 fastq.gz 14.8 GB
EGAF00008243590 fastq.gz 10.8 GB
EGAF00008243591 fastq.gz 27.1 GB
EGAF00008243592 fastq.gz 2.2 GB
EGAF00008243593 fastq.gz 5.4 GB
EGAF00008243594 fastq.gz 3.1 GB
EGAF00008243595 fastq.gz 7.6 GB
EGAF00008243716 fastq.gz 2.3 GB
EGAF00008243717 fastq.gz 4.9 GB
EGAF00008243718 fastq.gz 1.8 GB
EGAF00008243719 fastq.gz 2.2 GB
EGAF00008243720 fastq.gz 1.9 GB
EGAF00008243721 fastq.gz 2.3 GB
EGAF00008243722 fastq.gz 1.5 GB
EGAF00008243723 fastq.gz 1.7 GB
EGAF00008243724 fastq.gz 967.7 MB
EGAF00008243725 fastq.gz 2.4 GB
EGAF00008243726 fastq.gz 1.6 GB
EGAF00008243727 fastq.gz 2.0 GB
EGAF00008243728 fastq.gz 931.4 MB
EGAF00008243729 fastq.gz 2.2 GB
EGAF00008243730 fastq.gz 1.9 GB
EGAF00008243731 fastq.gz 2.3 GB
EGAF00008243732 fastq.gz 879.4 MB
EGAF00008243733 fastq.gz 2.1 GB
EGAF00008243734 fastq.gz 742.7 MB
EGAF00008243735 fastq.gz 1.7 GB
EGAF00008243736 fastq.gz 11.7 GB
EGAF00008243737 fastq.gz 27.2 GB
EGAF00008243738 fastq.gz 2.1 GB
EGAF00008243739 fastq.gz 2.4 GB
EGAF00008243740 fastq.gz 1.8 GB
EGAF00008243741 fastq.gz 1.9 GB
EGAF00008243742 fastq.gz 1.4 GB
EGAF00008243743 fastq.gz 1.5 GB
EGAF00008243744 fastq.gz 558.1 MB
EGAF00008243745 fastq.gz 1.3 GB
EGAF00008243746 fastq.gz 2.4 GB
EGAF00008243747 fastq.gz 5.1 GB
EGAF00008243748 fastq.gz 1.0 GB
EGAF00008243749 fastq.gz 1.2 GB
EGAF00008243750 fastq.gz 899.2 MB
EGAF00008243751 fastq.gz 2.1 GB
EGAF00008243752 fastq.gz 2.1 GB
EGAF00008243753 fastq.gz 2.3 GB
EGAF00008243754 fastq.gz 1.8 GB
EGAF00008243755 fastq.gz 2.0 GB
EGAF00008243756 fastq.gz 2.0 GB
EGAF00008243757 fastq.gz 2.2 GB
EGAF00008243758 fastq.gz 823.2 MB
EGAF00008243759 fastq.gz 960.0 MB
EGAF00008243760 fastq.gz 1.9 GB
EGAF00008243761 fastq.gz 2.0 GB
EGAF00008243762 fastq.gz 1.9 GB
EGAF00008243763 fastq.gz 2.3 GB
EGAF00008243764 fastq.gz 1.6 GB
EGAF00008243765 fastq.gz 2.0 GB
EGAF00008243766 fastq.gz 1.7 GB
EGAF00008243767 fastq.gz 1.9 GB
EGAF00008243768 fastq.gz 959.2 MB
EGAF00008243769 fastq.gz 1.1 GB
EGAF00008243770 fastq.gz 2.3 GB
EGAF00008243771 fastq.gz 2.7 GB
EGAF00008243772 fastq.gz 2.0 GB
EGAF00008243773 fastq.gz 4.3 GB
EGAF00008243774 fastq.gz 2.4 GB
EGAF00008243775 fastq.gz 2.7 GB
EGAF00008243776 fastq.gz 1.8 GB
EGAF00008243777 fastq.gz 2.2 GB
EGAF00008243778 fastq.gz 2.1 GB
EGAF00008243779 fastq.gz 4.6 GB
EGAF00008243780 fastq.gz 2.4 GB
EGAF00008243781 fastq.gz 5.1 GB
EGAF00008243782 fastq.gz 649.2 MB
EGAF00008243783 fastq.gz 1.5 GB
EGAF00008243784 fastq.gz 1.7 GB
EGAF00008243785 fastq.gz 2.1 GB
EGAF00008243786 fastq.gz 1.3 GB
EGAF00008243787 fastq.gz 1.6 GB
EGAF00008243788 fastq.gz 1.5 GB
EGAF00008243789 fastq.gz 1.8 GB
148 Files (913.6 GB)