scRNAseq of patients with chronic graft-versus-host-disease
This dataset contains 10 samples from 9 patients with chronic graft-versus-host disease (GVHD). Each sample is analysed with Chromium V(D)J and 5' Gene Expression Platform v1.1 (10X Genomics). The raw data includes fastq files for Gene expression and fastq files for V(D)J Expression. The processed data have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-13419.
- 120 samples
- DAC: EGAC00001003458
- Technology: Illumina NovaSeq 6000
Hematology Research Unit Helsinki Data access policy
The proposed research use must be consistent with the specific data use limitation for this study. Data use requests will be evaluated based on the Helsinki University Hospital ethics committee permit concerning the samples.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007606 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008272912 | fastq.gz | 1.1 GB | ||
| EGAF00008272913 | fastq.gz | 3.2 GB | ||
| EGAF00008272914 | fastq.gz | 7.9 GB | ||
| EGAF00008272915 | fastq.gz | 1.1 GB | ||
| EGAF00008272916 | fastq.gz | 3.2 GB | ||
| EGAF00008272917 | fastq.gz | 7.9 GB | ||
| EGAF00008272918 | fastq.gz | 1.1 GB | ||
| EGAF00008272919 | fastq.gz | 3.2 GB | ||
| EGAF00008272920 | fastq.gz | 7.8 GB | ||
| EGAF00008272921 | fastq.gz | 1.1 GB | ||
| EGAF00008272922 | fastq.gz | 3.2 GB | ||
| EGAF00008272923 | fastq.gz | 7.8 GB | ||
| EGAF00008272924 | fastq.gz | 1.2 GB | ||
| EGAF00008272925 | fastq.gz | 3.8 GB | ||
| EGAF00008272926 | fastq.gz | 9.4 GB | ||
| EGAF00008272927 | fastq.gz | 1.2 GB | ||
| EGAF00008272928 | fastq.gz | 3.8 GB | ||
| EGAF00008272929 | fastq.gz | 9.3 GB | ||
| EGAF00008272930 | fastq.gz | 1.2 GB | ||
| EGAF00008272931 | fastq.gz | 3.8 GB | ||
| EGAF00008272932 | fastq.gz | 9.3 GB | ||
| EGAF00008272933 | fastq.gz | 1.2 GB | ||
| EGAF00008272934 | fastq.gz | 3.8 GB | ||
| EGAF00008272935 | fastq.gz | 9.3 GB | ||
| EGAF00008272936 | fastq.gz | 169.0 MB | ||
| EGAF00008272937 | fastq.gz | 500.4 MB | ||
| EGAF00008272938 | fastq.gz | 1.1 GB | ||
| EGAF00008272939 | fastq.gz | 171.0 MB | ||
| EGAF00008272940 | fastq.gz | 510.3 MB | ||
| EGAF00008272941 | fastq.gz | 1.2 GB | ||
| EGAF00008272942 | fastq.gz | 150.3 MB | ||
| EGAF00008272943 | fastq.gz | 459.5 MB | ||
| EGAF00008272944 | fastq.gz | 996.4 MB | ||
| EGAF00008272945 | fastq.gz | 151.5 MB | ||
| EGAF00008272946 | fastq.gz | 466.5 MB | ||
| EGAF00008272947 | fastq.gz | 1.0 GB | ||
| EGAF00008272948 | fastq.gz | 1.5 GB | ||
| EGAF00008272949 | fastq.gz | 4.8 GB | ||
| EGAF00008272950 | fastq.gz | 11.7 GB | ||
| EGAF00008272951 | fastq.gz | 1.5 GB | ||
| EGAF00008272952 | fastq.gz | 4.8 GB | ||
| EGAF00008272953 | fastq.gz | 11.7 GB | ||
| EGAF00008272954 | fastq.gz | 1.5 GB | ||
| EGAF00008272955 | fastq.gz | 4.8 GB | ||
| EGAF00008272956 | fastq.gz | 11.6 GB | ||
| EGAF00008272957 | fastq.gz | 1.5 GB | ||
| EGAF00008272958 | fastq.gz | 4.8 GB | ||
| EGAF00008272959 | fastq.gz | 11.6 GB | ||
| EGAF00008272960 | fastq.gz | 181.3 MB | ||
| EGAF00008272961 | fastq.gz | 535.0 MB | ||
| EGAF00008272962 | fastq.gz | 1.2 GB | ||
| EGAF00008272963 | fastq.gz | 183.8 MB | ||
| EGAF00008272964 | fastq.gz | 545.8 MB | ||
| EGAF00008272965 | fastq.gz | 1.2 GB | ||
| EGAF00008272966 | fastq.gz | 1.3 GB | ||
| EGAF00008272967 | fastq.gz | 3.9 GB | ||
| EGAF00008272968 | fastq.gz | 9.6 GB | ||
| EGAF00008272969 | fastq.gz | 1.3 GB | ||
| EGAF00008272970 | fastq.gz | 3.9 GB | ||
| EGAF00008272971 | fastq.gz | 9.6 GB | ||
| EGAF00008272972 | fastq.gz | 1.3 GB | ||
| EGAF00008272973 | fastq.gz | 3.9 GB | ||
| EGAF00008272974 | fastq.gz | 9.6 GB | ||
| EGAF00008272975 | fastq.gz | 1.3 GB | ||
| EGAF00008272976 | fastq.gz | 3.9 GB | ||
| EGAF00008272977 | fastq.gz | 9.6 GB | ||
| EGAF00008272978 | fastq.gz | 151.4 MB | ||
| EGAF00008272979 | fastq.gz | 438.7 MB | ||
| EGAF00008272980 | fastq.gz | 981.6 MB | ||
| EGAF00008272981 | fastq.gz | 152.3 MB | ||
| EGAF00008272982 | fastq.gz | 445.3 MB | ||
| EGAF00008272983 | fastq.gz | 994.0 MB | ||
| EGAF00008272984 | fastq.gz | 1.3 GB | ||
| EGAF00008272985 | fastq.gz | 3.8 GB | ||
| EGAF00008272986 | fastq.gz | 9.2 GB | ||
| EGAF00008272987 | fastq.gz | 1.3 GB | ||
| EGAF00008272988 | fastq.gz | 3.8 GB | ||
| EGAF00008272989 | fastq.gz | 9.2 GB | ||
| EGAF00008272990 | fastq.gz | 1.3 GB | ||
| EGAF00008272991 | fastq.gz | 3.8 GB | ||
| EGAF00008272992 | fastq.gz | 9.1 GB | ||
| EGAF00008272993 | fastq.gz | 1.3 GB | ||
| EGAF00008272994 | fastq.gz | 3.8 GB | ||
| EGAF00008272995 | fastq.gz | 9.2 GB | ||
| EGAF00008272996 | fastq.gz | 189.5 MB | ||
| EGAF00008272997 | fastq.gz | 577.9 MB | ||
| EGAF00008272998 | fastq.gz | 1.3 GB | ||
| EGAF00008272999 | fastq.gz | 191.2 MB | ||
| EGAF00008273000 | fastq.gz | 587.0 MB | ||
| EGAF00008273001 | fastq.gz | 1.3 GB | ||
| EGAF00008273002 | fastq.gz | 1.4 GB | ||
| EGAF00008273003 | fastq.gz | 4.5 GB | ||
| EGAF00008273004 | fastq.gz | 11.0 GB | ||
| EGAF00008273005 | fastq.gz | 1.4 GB | ||
| EGAF00008273006 | fastq.gz | 4.5 GB | ||
| EGAF00008273007 | fastq.gz | 11.0 GB | ||
| EGAF00008273008 | fastq.gz | 1.4 GB | ||
| EGAF00008273009 | fastq.gz | 4.5 GB | ||
| EGAF00008273010 | fastq.gz | 10.9 GB | ||
| EGAF00008273011 | fastq.gz | 1.4 GB | ||
| EGAF00008273012 | fastq.gz | 4.5 GB | ||
| EGAF00008273013 | fastq.gz | 10.9 GB | ||
| EGAF00008273014 | fastq.gz | 183.6 MB | ||
| EGAF00008273015 | fastq.gz | 550.3 MB | ||
| EGAF00008273016 | fastq.gz | 1.3 GB | ||
| EGAF00008273017 | fastq.gz | 185.0 MB | ||
| EGAF00008273018 | fastq.gz | 559.4 MB | ||
| EGAF00008273019 | fastq.gz | 1.3 GB | ||
| EGAF00008273020 | fastq.gz | 1.2 GB | ||
| EGAF00008273021 | fastq.gz | 3.8 GB | ||
| EGAF00008273022 | fastq.gz | 9.2 GB | ||
| EGAF00008273023 | fastq.gz | 1.2 GB | ||
| EGAF00008273024 | fastq.gz | 3.8 GB | ||
| EGAF00008273025 | fastq.gz | 9.2 GB | ||
| EGAF00008273026 | fastq.gz | 1.2 GB | ||
| EGAF00008273027 | fastq.gz | 3.8 GB | ||
| EGAF00008273028 | fastq.gz | 9.1 GB | ||
| EGAF00008273029 | fastq.gz | 1.2 GB | ||
| EGAF00008273030 | fastq.gz | 3.8 GB | ||
| EGAF00008273031 | fastq.gz | 9.2 GB | ||
| EGAF00008273032 | fastq.gz | 213.8 MB | ||
| EGAF00008273033 | fastq.gz | 609.7 MB | ||
| EGAF00008273034 | fastq.gz | 1.4 GB | ||
| EGAF00008273035 | fastq.gz | 216.6 MB | ||
| EGAF00008273036 | fastq.gz | 621.0 MB | ||
| EGAF00008273037 | fastq.gz | 1.4 GB | ||
| EGAF00008273038 | fastq.gz | 1.3 GB | ||
| EGAF00008273039 | fastq.gz | 4.0 GB | ||
| EGAF00008273040 | fastq.gz | 9.7 GB | ||
| EGAF00008273041 | fastq.gz | 1.3 GB | ||
| EGAF00008273042 | fastq.gz | 4.0 GB | ||
| EGAF00008273043 | fastq.gz | 9.7 GB | ||
| EGAF00008273044 | fastq.gz | 1.3 GB | ||
| EGAF00008273045 | fastq.gz | 4.0 GB | ||
| EGAF00008273046 | fastq.gz | 9.6 GB | ||
| EGAF00008273047 | fastq.gz | 1.3 GB | ||
| EGAF00008273048 | fastq.gz | 4.0 GB | ||
| EGAF00008273049 | fastq.gz | 9.7 GB | ||
| EGAF00008273050 | fastq.gz | 170.3 MB | ||
| EGAF00008273051 | fastq.gz | 491.6 MB | ||
| EGAF00008273052 | fastq.gz | 1.1 GB | ||
| EGAF00008273053 | fastq.gz | 171.7 MB | ||
| EGAF00008273054 | fastq.gz | 498.5 MB | ||
| EGAF00008273055 | fastq.gz | 1.1 GB | ||
| EGAF00008273056 | fastq.gz | 1.1 GB | ||
| EGAF00008273057 | fastq.gz | 3.2 GB | ||
| EGAF00008273058 | fastq.gz | 7.9 GB | ||
| EGAF00008273059 | fastq.gz | 1.0 GB | ||
| EGAF00008273060 | fastq.gz | 3.2 GB | ||
| EGAF00008273061 | fastq.gz | 7.8 GB | ||
| EGAF00008273062 | fastq.gz | 1.0 GB | ||
| EGAF00008273063 | fastq.gz | 3.2 GB | ||
| EGAF00008273064 | fastq.gz | 7.8 GB | ||
| EGAF00008273065 | fastq.gz | 1.0 GB | ||
| EGAF00008273066 | fastq.gz | 3.2 GB | ||
| EGAF00008273067 | fastq.gz | 7.8 GB | ||
| EGAF00008273068 | fastq.gz | 75.2 MB | ||
| EGAF00008273069 | fastq.gz | 209.7 MB | ||
| EGAF00008273070 | fastq.gz | 459.7 MB | ||
| EGAF00008273071 | fastq.gz | 75.6 MB | ||
| EGAF00008273072 | fastq.gz | 212.5 MB | ||
| EGAF00008273073 | fastq.gz | 464.4 MB | ||
| EGAF00008273074 | fastq.gz | 1.2 GB | ||
| EGAF00008273075 | fastq.gz | 3.9 GB | ||
| EGAF00008273076 | fastq.gz | 9.5 GB | ||
| EGAF00008273077 | fastq.gz | 1.2 GB | ||
| EGAF00008273078 | fastq.gz | 3.9 GB | ||
| EGAF00008273079 | fastq.gz | 9.5 GB | ||
| EGAF00008273080 | fastq.gz | 1.2 GB | ||
| EGAF00008273081 | fastq.gz | 3.8 GB | ||
| EGAF00008273082 | fastq.gz | 9.4 GB | ||
| EGAF00008273083 | fastq.gz | 1.2 GB | ||
| EGAF00008273084 | fastq.gz | 3.9 GB | ||
| EGAF00008273085 | fastq.gz | 9.5 GB | ||
| EGAF00008273086 | fastq.gz | 87.4 MB | ||
| EGAF00008273087 | fastq.gz | 238.7 MB | ||
| EGAF00008273088 | fastq.gz | 522.8 MB | ||
| EGAF00008273089 | fastq.gz | 88.5 MB | ||
| EGAF00008273090 | fastq.gz | 242.6 MB | ||
| EGAF00008273091 | fastq.gz | 530.5 MB | ||
| 180 Files (617.9 GB) | ||||