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ChIP-seq ERa in primary breast cancer tissues

ChIP-seq has been perfomed on 5 tumor fresh-frozen primary breast cancer tissues from female patients. Immunoprecipitation has been performed for ERa (SC-543, Santa Cruz). Raw single-end fastq data have been aligned using bwa-mem using Hg19 genome assebly as reference. Unfiltered aligment bam files are provided.

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NKI_DAC_Wilbert Zwart

The NKI DAC for this dataset is composed of the main PI on the study (Wilbert Zwart), the NKI Data Security Officer, head of the NKI Biobank and a member of the NKI IRB. All proposals on data access need to contain a section of hypothesis, type of analyses to be performed, local infrastructure on data processing and data security/ privacy policy. Proposals on data access are discussed within the DAC, which will reach a decision within 2 weeks after requesting access. When any member of the DAC raises any concerns regarding any of the above-mentioned issues, the study PI will contact the individual(s) who requested access by email to further elaborate and resolve the issue. Only when all members of the committee approve, access can be granted.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000008 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000046585 bam 1.5 GB
EGAF50000046586 bam 2.1 GB
EGAF50000046587 bam 1.3 GB
EGAF50000046588 bam 1.6 GB
EGAF50000046589 bam 1.4 GB
EGAF50000046590 bam 1.2 GB
6 Files (9.1 GB)