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10X Chromium 5' scRNA, scTCR and scBCR sequencing of pre- and on-treatment HNSCC biopsy samples

We performed 10X Chromium 5' scRNA (n=50), scTCR (n=48) and scBCR (n=49) sequencing of pre- and on-treatment HNSCC biopsy samples.

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VIB Policy for Data Access and Data Transfer

VIB Policy for Data Access and Data Transfer Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000037 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000050015 fastq.gz 1.8 GB
EGAF50000050016 fastq.gz 265.0 MB
EGAF50000050017 fastq.gz 299.4 MB
EGAF50000050018 fastq.gz 454.8 MB
EGAF50000050019 fastq.gz 3.2 GB
EGAF50000050020 fastq.gz 3.1 GB
EGAF50000050021 fastq.gz 796.5 MB
EGAF50000050022 fastq.gz 1.4 GB
EGAF50000050023 fastq.gz 2.9 GB
EGAF50000050024 fastq.gz 3.9 GB
EGAF50000050025 fastq.gz 1.8 GB
EGAF50000050026 fastq.gz 2.2 GB
EGAF50000050027 fastq.gz 2.8 GB
EGAF50000050028 fastq.gz 5.1 GB
EGAF50000050029 fastq.gz 2.1 GB
EGAF50000050030 fastq.gz 4.7 GB
EGAF50000050031 fastq.gz 2.4 GB
EGAF50000050032 fastq.gz 3.1 GB
EGAF50000050033 fastq.gz 11.1 GB
EGAF50000050034 fastq.gz 10.3 GB
EGAF50000050035 fastq.gz 12.0 GB
EGAF50000050036 fastq.gz 2.2 GB
EGAF50000050037 fastq.gz 1.1 GB
EGAF50000050038 fastq.gz 5.3 GB
EGAF50000050039 fastq.gz 2.7 GB
EGAF50000050040 fastq.gz 11.8 GB
EGAF50000050041 fastq.gz 2.9 GB
EGAF50000050042 fastq.gz 7.0 GB
EGAF50000050043 fastq.gz 1.7 GB
EGAF50000050044 fastq.gz 4.0 GB
EGAF50000050077 fastq.gz 5.1 GB
EGAF50000050078 fastq.gz 532.7 MB
EGAF50000050079 fastq.gz 3.3 GB
EGAF50000050080 fastq.gz 1.0 GB
EGAF50000050081 fastq.gz 1.4 GB
EGAF50000050082 fastq.gz 1.9 GB
EGAF50000050083 fastq.gz 872.6 MB
EGAF50000050084 fastq.gz 973.0 MB
EGAF50000050085 fastq.gz 837.5 MB
EGAF50000050086 fastq.gz 1.6 GB
EGAF50000050087 fastq.gz 2.8 GB
EGAF50000050088 fastq.gz 1.9 GB
EGAF50000050089 fastq.gz 975.8 MB
EGAF50000050090 fastq.gz 2.2 GB
EGAF50000050091 fastq.gz 1.4 GB
EGAF50000050092 fastq.gz 3.3 GB
EGAF50000050093 fastq.gz 597.6 MB
EGAF50000050094 fastq.gz 1.4 GB
EGAF50000050095 fastq.gz 3.9 GB
EGAF50000050096 fastq.gz 432.4 MB
EGAF50000050097 fastq.gz 1.0 GB
EGAF50000050098 fastq.gz 1.1 GB
EGAF50000050099 fastq.gz 2.6 GB
EGAF50000050100 fastq.gz 2.0 GB
EGAF50000050101 fastq.gz 2.2 GB
EGAF50000050102 fastq.gz 5.5 GB
EGAF50000050103 fastq.gz 2.4 GB
EGAF50000050104 fastq.gz 5.6 GB
EGAF50000050105 fastq.gz 8.7 GB
EGAF50000050106 fastq.gz 24.4 GB
EGAF50000050107 fastq.gz 2.9 GB
EGAF50000050108 fastq.gz 6.7 GB
EGAF50000050109 fastq.gz 763.0 MB
EGAF50000050110 fastq.gz 513.7 MB
EGAF50000050111 fastq.gz 3.1 GB
EGAF50000050112 fastq.gz 2.2 GB
EGAF50000050113 fastq.gz 2.2 GB
EGAF50000050114 fastq.gz 2.0 GB
EGAF50000050115 fastq.gz 2.0 GB
EGAF50000050116 fastq.gz 2.4 GB
EGAF50000050117 fastq.gz 2.7 GB
EGAF50000050118 fastq.gz 1.5 GB
EGAF50000050119 fastq.gz 1.6 GB
EGAF50000050120 fastq.gz 3.7 GB
EGAF50000050121 fastq.gz 3.5 GB
EGAF50000050122 fastq.gz 8.4 GB
EGAF50000050123 fastq.gz 1.0 GB
EGAF50000050124 fastq.gz 2.4 GB
EGAF50000050135 fastq.gz 2.3 GB
EGAF50000050137 fastq.gz 697.5 MB
EGAF50000050138 fastq.gz 1.6 GB
EGAF50000050139 fastq.gz 2.0 GB
EGAF50000050140 fastq.gz 689.4 MB
EGAF50000050141 fastq.gz 693.8 MB
EGAF50000050142 fastq.gz 2.2 GB
EGAF50000050143 fastq.gz 1.7 GB
EGAF50000050144 fastq.gz 12.6 GB
EGAF50000050145 fastq.gz 2.0 GB
EGAF50000050146 fastq.gz 3.0 GB
EGAF50000050147 fastq.gz 7.7 GB
EGAF50000050148 fastq.gz 18.2 GB
EGAF50000050149 fastq.gz 3.1 GB
EGAF50000050150 fastq.gz 7.3 GB
EGAF50000050151 fastq.gz 5.1 GB
EGAF50000050152 fastq.gz 1.7 GB
EGAF50000050153 fastq.gz 3.6 GB
EGAF50000050154 fastq.gz 4.9 GB
EGAF50000050155 fastq.gz 2.9 GB
EGAF50000050156 fastq.gz 1.8 GB
EGAF50000050158 fastq.gz 613.6 MB
EGAF50000050159 fastq.gz 2.5 GB
EGAF50000050160 fastq.gz 1.2 GB
EGAF50000050161 fastq.gz 2.3 GB
EGAF50000050162 fastq.gz 2.3 GB
EGAF50000050163 fastq.gz 755.3 MB
EGAF50000050164 fastq.gz 299.9 MB
EGAF50000050165 fastq.gz 920.4 MB
EGAF50000050168 fastq.gz 7.3 GB
EGAF50000050169 fastq.gz 4.4 GB
EGAF50000050170 fastq.gz 2.3 GB
EGAF50000050171 fastq.gz 5.6 GB
EGAF50000050188 fastq.gz 1.9 GB
EGAF50000050189 fastq.gz 2.1 GB
EGAF50000050190 fastq.gz 1.5 GB
EGAF50000050191 fastq.gz 1.7 GB
EGAF50000050192 fastq.gz 2.3 GB
EGAF50000050193 fastq.gz 3.3 GB
EGAF50000050194 fastq.gz 1.2 GB
EGAF50000050195 fastq.gz 1.8 GB
EGAF50000050196 fastq.gz 539.0 MB
EGAF50000050197 fastq.gz 581.3 MB
EGAF50000050198 fastq.gz 1.8 GB
EGAF50000050199 fastq.gz 1.3 GB
EGAF50000050200 fastq.gz 1.8 GB
EGAF50000050201 fastq.gz 544.5 MB
EGAF50000050202 fastq.gz 744.4 MB
EGAF50000050203 fastq.gz 1.0 GB
EGAF50000050204 fastq.gz 1.1 GB
EGAF50000050205 fastq.gz 1.6 GB
EGAF50000050206 fastq.gz 1.6 GB
EGAF50000050207 fastq.gz 1.7 GB
EGAF50000050208 fastq.gz 1.5 GB
EGAF50000050209 fastq.gz 1.7 GB
EGAF50000050210 fastq.gz 1.5 GB
EGAF50000050211 fastq.gz 1.7 GB
EGAF50000050212 fastq.gz 1.1 GB
EGAF50000050213 fastq.gz 992.7 MB
EGAF50000050214 fastq.gz 1.4 GB
EGAF50000050215 fastq.gz 2.0 GB
EGAF50000050216 fastq.gz 1.3 GB
EGAF50000050217 fastq.gz 2.0 GB
EGAF50000050218 fastq.gz 1.3 GB
EGAF50000050219 fastq.gz 1.9 GB
EGAF50000050220 fastq.gz 735.4 MB
EGAF50000050221 fastq.gz 718.7 MB
EGAF50000050222 fastq.gz 1.2 GB
EGAF50000050223 fastq.gz 1.5 GB
EGAF50000050224 fastq.gz 777.4 MB
EGAF50000050225 fastq.gz 1.2 GB
EGAF50000050226 fastq.gz 2.6 GB
EGAF50000050227 fastq.gz 4.1 GB
EGAF50000050228 fastq.gz 1.7 GB
EGAF50000050229 fastq.gz 1.5 GB
EGAF50000050230 fastq.gz 2.3 GB
EGAF50000050231 fastq.gz 1.0 GB
EGAF50000050232 fastq.gz 1.6 GB
EGAF50000050233 fastq.gz 1.7 GB
EGAF50000050234 fastq.gz 2.0 GB
EGAF50000050235 fastq.gz 1.1 GB
EGAF50000050236 fastq.gz 1.3 GB
EGAF50000050237 fastq.gz 2.7 GB
EGAF50000050238 fastq.gz 3.4 GB
EGAF50000050239 fastq.gz 2.0 GB
EGAF50000050240 fastq.gz 2.5 GB
EGAF50000050241 fastq.gz 921.0 MB
EGAF50000050242 fastq.gz 1.3 GB
EGAF50000050243 fastq.gz 1.7 GB
EGAF50000050244 fastq.gz 2.3 GB
EGAF50000050245 fastq.gz 656.3 MB
EGAF50000050246 fastq.gz 819.4 MB
EGAF50000050247 fastq.gz 954.6 MB
EGAF50000050248 fastq.gz 1.2 GB
EGAF50000050249 fastq.gz 502.5 MB
EGAF50000050250 fastq.gz 621.4 MB
EGAF50000050251 fastq.gz 1.7 GB
EGAF50000050252 fastq.gz 2.3 GB
EGAF50000050253 fastq.gz 619.4 MB
EGAF50000050254 fastq.gz 748.8 MB
EGAF50000050255 fastq.gz 2.6 GB
EGAF50000050256 fastq.gz 557.8 MB
EGAF50000050257 fastq.gz 701.1 MB
EGAF50000050258 fastq.gz 826.2 MB
EGAF50000050259 fastq.gz 1.8 GB
EGAF50000050260 fastq.gz 765.8 MB
EGAF50000050261 fastq.gz 1.8 GB
EGAF50000050262 fastq.gz 956.4 MB
EGAF50000050263 fastq.gz 2.1 GB
EGAF50000050264 fastq.gz 322.4 MB
EGAF50000050265 fastq.gz 764.5 MB
EGAF50000050266 fastq.gz 384.3 MB
EGAF50000050267 fastq.gz 873.1 MB
EGAF50000050268 fastq.gz 255.1 MB
EGAF50000050269 fastq.gz 570.3 MB
EGAF50000050270 fastq.gz 2.8 GB
EGAF50000050271 fastq.gz 824.4 MB
EGAF50000050272 fastq.gz 683.3 MB
EGAF50000050273 fastq.gz 705.4 MB
EGAF50000050274 fastq.gz 2.3 GB
EGAF50000050275 fastq.gz 2.3 GB
EGAF50000050276 fastq.gz 817.3 MB
EGAF50000050277 fastq.gz 835.9 MB
EGAF50000050278 fastq.gz 2.0 GB
EGAF50000050279 fastq.gz 711.7 MB
EGAF50000050280 fastq.gz 736.4 MB
EGAF50000050281 fastq.gz 776.1 MB
EGAF50000050282 fastq.gz 791.3 MB
EGAF50000050283 fastq.gz 1.5 GB
EGAF50000050284 fastq.gz 1.5 GB
EGAF50000050285 fastq.gz 692.4 MB
EGAF50000050286 fastq.gz 1.1 GB
EGAF50000050287 fastq.gz 1.1 GB
EGAF50000050288 fastq.gz 1.1 GB
EGAF50000050289 fastq.gz 1.1 GB
EGAF50000050290 fastq.gz 1.2 GB
EGAF50000050291 fastq.gz 1.2 GB
EGAF50000050292 fastq.gz 958.7 MB
EGAF50000050293 fastq.gz 970.5 MB
EGAF50000050294 fastq.gz 1.1 GB
EGAF50000050295 fastq.gz 1.1 GB
EGAF50000050296 fastq.gz 1.1 GB
EGAF50000050297 fastq.gz 1.1 GB
EGAF50000050298 fastq.gz 2.7 GB
EGAF50000050299 fastq.gz 2.6 GB
EGAF50000050300 fastq.gz 1.7 GB
EGAF50000050301 fastq.gz 1.6 GB
EGAF50000050302 fastq.gz 3.2 GB
EGAF50000050303 fastq.gz 2.0 GB
EGAF50000050304 fastq.gz 4.2 GB
EGAF50000050305 fastq.gz 5.3 GB
EGAF50000050306 fastq.gz 4.7 GB
EGAF50000050307 fastq.gz 5.9 GB
EGAF50000050308 fastq.gz 2.0 GB
EGAF50000050309 fastq.gz 1.9 GB
EGAF50000050310 fastq.gz 879.4 MB
EGAF50000050311 fastq.gz 1.0 GB
EGAF50000050312 fastq.gz 3.0 GB
EGAF50000050313 fastq.gz 2.0 GB
EGAF50000050314 fastq.gz 2.2 GB
EGAF50000050315 fastq.gz 1.2 GB
EGAF50000050316 fastq.gz 1.4 GB
EGAF50000050317 fastq.gz 6.7 GB
EGAF50000050318 fastq.gz 8.3 GB
EGAF50000050319 fastq.gz 1.7 GB
EGAF50000050320 fastq.gz 2.0 GB
EGAF50000050321 fastq.gz 4.7 GB
EGAF50000050322 fastq.gz 1.0 GB
EGAF50000050323 fastq.gz 1.3 GB
EGAF50000050324 fastq.gz 606.5 MB
EGAF50000050325 fastq.gz 2.8 GB
EGAF50000050326 fastq.gz 6.9 GB
EGAF50000050327 fastq.gz 5.2 GB
EGAF50000050328 fastq.gz 2.0 GB
EGAF50000050329 fastq.gz 4.9 GB
EGAF50000050330 fastq.gz 637.6 MB
EGAF50000050331 fastq.gz 1.4 GB
EGAF50000050332 fastq.gz 2.7 GB
EGAF50000050333 fastq.gz 6.5 GB
EGAF50000050334 fastq.gz 3.3 GB
EGAF50000050335 fastq.gz 8.0 GB
EGAF50000050336 fastq.gz 2.6 GB
EGAF50000050337 fastq.gz 6.1 GB
EGAF50000050338 fastq.gz 1.3 GB
EGAF50000050339 fastq.gz 3.0 GB
EGAF50000050340 fastq.gz 7.4 GB
EGAF50000050341 fastq.gz 2.0 GB
EGAF50000050342 fastq.gz 4.9 GB
EGAF50000050343 fastq.gz 4.4 GB
EGAF50000050344 fastq.gz 526.0 MB
EGAF50000050345 fastq.gz 1.0 GB
EGAF50000050346 fastq.gz 7.2 GB
EGAF50000050347 fastq.gz 2.5 GB
EGAF50000050348 fastq.gz 6.1 GB
EGAF50000050349 fastq.gz 8.1 GB
EGAF50000050350 fastq.gz 19.7 GB
EGAF50000050351 fastq.gz 2.2 GB
EGAF50000050352 fastq.gz 5.4 GB
EGAF50000050353 fastq.gz 5.2 GB
EGAF50000050354 fastq.gz 12.8 GB
EGAF50000050355 fastq.gz 1.6 GB
EGAF50000050356 fastq.gz 3.9 GB
EGAF50000050357 fastq.gz 4.5 GB
EGAF50000050358 fastq.gz 2.2 GB
EGAF50000050359 fastq.gz 5.4 GB
EGAF50000050360 fastq.gz 3.4 GB
EGAF50000050361 fastq.gz 8.2 GB
EGAF50000050362 fastq.gz 888.6 MB
EGAF50000050363 fastq.gz 1.9 GB
EGAF50000050364 fastq.gz 4.4 GB
EGAF50000050365 fastq.gz 1.3 GB
EGAF50000050366 fastq.gz 4.2 GB
EGAF50000050367 fastq.gz 10.1 GB
EGAF50000050368 fastq.gz 1.6 GB
EGAF50000050369 fastq.gz 3.7 GB
EGAF50000050370 fastq.gz 1.0 GB
294 Files (804.2 GB)