Single-cell transcriptomic analyses of peripheral blood mononuclear cells from patients with colorectal cancer metastasized to the peritoneum
The data published here contains single-cell RNA-sequencing (scRNAseq) data as obtained using the 3' scRNAseq using Chromium Single Cell 3’ Reagent from 10X Genomics on peripheral blood mononuclear cells (PBMC) from patients with colorectal cancer (CRC) and peritoneal metastases (PM). Sequencing was performed in a paired-ended fashion on the NovaSeq6000.
- 05/02/2024
- 13 samples
- DAC: EGAC50000000096
- Technologies: Illumina HiSeq 4000, Illumina NovaSeq 6000
Data Access Policy Tytgat Institute AmsterdamUMC
Access requests undergo a comprehensive review by the Data Access Committee of Tytgat Institute for Liver and Intestinal Research, Amsterdam UMC (DAC-TI). Request will only be granted to qualified users for appropriate use. Applicants are required to submit detailed proposals outlining the purpose, methodology, and ethical considerations of their research. Procedure: 1) The Applicant sends a data access request through European Genome-phenome Archive (EGA) to the DAC-TI. 2) Upon submission, a representative of the DAC-TI will send a Data Request Form (DRF) to the Application. Upon completing the DRF, this form must be returned to the DAC-TI whereupon the evaluation process will commence. 3) When a request is positively evaluated, the applicant will be asked to sign the Data Sharing Agreement. Review and Conditions: - Each DRF is assessed based on the scientific profile of the applicants, the scientific merit, ethical implications, data security plans, and compliance with the relevant regulations, within a specified timeframe. - The DAC-TI reserves the right to conduct periodic reviews to ensure responsible data use. - Approval is contingent on meeting the criteria and compliance with relevant regulations.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000173 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000083524 | fastq.gz | 14.9 GB | ||
| EGAF50000083525 | fastq.gz | 18.6 GB | ||
| EGAF50000083530 | fastq.gz | 17.7 GB | ||
| EGAF50000083531 | fastq.gz | 15.1 GB | ||
| EGAF50000083532 | fastq.gz | 18.8 GB | ||
| EGAF50000083533 | fastq.gz | 14.9 GB | ||
| EGAF50000083536 | fastq.gz | 20.2 GB | ||
| EGAF50000083537 | fastq.gz | 15.8 GB | ||
| EGAF50000083542 | fastq.gz | 14.7 GB | ||
| EGAF50000083543 | fastq.gz | 17.8 GB | ||
| EGAF50000083546 | fastq.gz | 16.4 GB | ||
| EGAF50000083547 | fastq.gz | 4.6 GB | ||
| EGAF50000083548 | fastq.gz | 5.1 GB | ||
| EGAF50000083549 | fastq.gz | 18.3 GB | ||
| EGAF50000083554 | fastq.gz | 14.5 GB | ||
| EGAF50000083555 | fastq.gz | 17.4 GB | ||
| EGAF50000083556 | fastq.gz | 18.8 GB | ||
| EGAF50000083557 | fastq.gz | 15.3 GB | ||
| EGAF50000083560 | fastq.gz | 4.7 GB | ||
| EGAF50000083561 | fastq.gz | 17.2 GB | ||
| EGAF50000083566 | fastq.gz | 4.4 GB | ||
| EGAF50000083567 | fastq.gz | 15.9 GB | ||
| EGAF50000083580 | fastq.gz | 18.5 GB | ||
| EGAF50000083581 | fastq.gz | 15.1 GB | ||
| EGAF50000083582 | fastq.gz | 4.3 GB | ||
| EGAF50000083583 | fastq.gz | 15.6 GB | ||
| 26 Files (374.6 GB) | ||||