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Single-cell RNA-sequencing of peripheral blood mononuclear cells from patients with achalasia

The data published here contains single-cell RNA-sequencing (scRNAseq) data as obtained using the 3' scRNAseq using Chromium Single Cell 3’ Reagent from 10X Genomics on peripheral blood mononuclear cells (PBMC) from patients with achalasia. Sequencing was performed in a paired-ended fashion on the NovaSeq6000.

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Data Access Policy Tytgat Institute AmsterdamUMC

Access requests undergo a comprehensive review by the Data Access Committee of Tytgat Institute for Liver and Intestinal Research, Amsterdam UMC (DAC-TI). Request will only be granted to qualified users for appropriate use. Applicants are required to submit detailed proposals outlining the purpose, methodology, and ethical considerations of their research. Procedure: 1) The Applicant sends a data access request through European Genome-phenome Archive (EGA) to the DAC-TI. 2) Upon submission, a representative of the DAC-TI will send a Data Request Form (DRF) to the Application. Upon completing the DRF, this form must be returned to the DAC-TI whereupon the evaluation process will commence. 3) When a request is positively evaluated, the applicant will be asked to sign the Data Sharing Agreement. Review and Conditions: - Each DRF is assessed based on the scientific profile of the applicants, the scientific merit, ethical implications, data security plans, and compliance with the relevant regulations, within a specified timeframe. - The DAC-TI reserves the right to conduct periodic reviews to ensure responsible data use. - Approval is contingent on meeting the criteria and compliance with relevant regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000174 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000083597 fastq.gz 4.2 GB
EGAF50000083598 fastq.gz 15.4 GB
EGAF50000083603 fastq.gz 3.6 GB
EGAF50000083604 fastq.gz 13.3 GB
EGAF50000083607 fastq.gz 18.1 GB
EGAF50000083608 fastq.gz 5.0 GB
EGAF50000083614 fastq.gz 4.8 GB
EGAF50000083615 fastq.gz 17.4 GB
EGAF50000083618 fastq.gz 13.5 GB
EGAF50000083619 fastq.gz 3.7 GB
10 Files (99.1 GB)