Single-cell RNA-seq of immune cell subsets isolated from human tumors (Kaptein et al., 2024)
Single-cell RNA-seq profiling of effector (KLRG1+ PD1-), transitional (KLRG1+ PD1-intermediate), dysfunctional (CD39+ PD1+) and memory (IL7Rα+) CD8 T cells isolated from 4 human tumors (1 melanoma, 1 renal carcinoma and 2 ovarian carcinoma). Respective cell populations were identified and isolated using FACS. FASTQ files contain gene expression data, feature barcode antibody capture or TCR data on individual CD8 T cell subsets across the 4 different samples.
- 02/04/2024
- 12 samples
- DAC: EGAC50000000055
- Technology: Illumina NovaSeq 6000
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Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007712 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000092473 | fastq.gz | 587.6 MB | ||
| EGAF50000092474 | fastq.gz | 1.0 GB | ||
| EGAF50000092475 | fastq.gz | 1.7 GB | ||
| EGAF50000092476 | fastq.gz | 3.7 GB | ||
| EGAF50000092477 | fastq.gz | 6.0 GB | ||
| EGAF50000092478 | fastq.gz | 14.1 GB | ||
| EGAF50000092479 | fastq.gz | 1.1 GB | ||
| EGAF50000092480 | fastq.gz | 1.9 GB | ||
| EGAF50000092483 | fastq.gz | 1.7 GB | ||
| EGAF50000092484 | fastq.gz | 3.6 GB | ||
| EGAF50000092485 | fastq.gz | 1.5 GB | ||
| EGAF50000092486 | fastq.gz | 846.0 MB | ||
| EGAF50000092487 | fastq.gz | 1.9 GB | ||
| EGAF50000092488 | fastq.gz | 4.2 GB | ||
| EGAF50000092489 | fastq.gz | 6.1 GB | ||
| EGAF50000092490 | fastq.gz | 2.7 GB | ||
| EGAF50000092513 | fastq.gz | 6.2 GB | ||
| EGAF50000092514 | fastq.gz | 14.6 GB | ||
| EGAF50000092519 | fastq.gz | 6.0 GB | ||
| EGAF50000092520 | fastq.gz | 14.6 GB | ||
| EGAF50000092521 | fastq.gz | 1.0 GB | ||
| EGAF50000092522 | fastq.gz | 1.8 GB | ||
| EGAF50000092525 | fastq.gz | 7.9 GB | ||
| EGAF50000092526 | fastq.gz | 19.0 GB | ||
| 24 Files (123.8 GB) | ||||