DNA sequening
The dataset consist of DNA and RNA sequencing results and metadata of the samples. All sample numbers starting with 6716 are tumor samples which has been sequenced using WES (see BAM files). It concerns biopsies of metastatic lesions from patients with BRAFV600 mutated melanoma, obtained before, during and after the study treatment (see samples metadata) and in some cases blood for germline mutation analysis. Sequencing is performed using the Illumina Novaseq 6000 system.
- 02/04/2024
- 41 samples
- DAC: EGAC50000000055
- Technology: Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007709 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000093005 | cram | 11.6 GB | ||
| EGAF50000093006 | cram | 11.5 GB | ||
| EGAF50000093007 | cram | 10.8 GB | ||
| EGAF50000093008 | cram | 10.8 GB | ||
| EGAF50000093009 | cram | 13.0 GB | ||
| EGAF50000093010 | cram | 11.0 GB | ||
| EGAF50000093011 | cram | 11.8 GB | ||
| EGAF50000093012 | cram | 10.5 GB | ||
| EGAF50000093013 | cram | 11.3 GB | ||
| EGAF50000093014 | cram | 10.3 GB | ||
| EGAF50000093015 | cram | 9.9 GB | ||
| EGAF50000093016 | cram | 8.6 GB | ||
| EGAF50000093017 | cram | 9.8 GB | ||
| EGAF50000093018 | cram | 9.4 GB | ||
| EGAF50000093019 | cram | 8.9 GB | ||
| EGAF50000093020 | cram | 9.3 GB | ||
| EGAF50000093021 | cram | 8.0 GB | ||
| EGAF50000093022 | cram | 6.7 GB | ||
| EGAF50000093028 | cram | 10.1 GB | ||
| EGAF50000093029 | cram | 10.0 GB | ||
| EGAF50000093030 | cram | 11.5 GB | ||
| EGAF50000093031 | cram | 11.4 GB | ||
| EGAF50000093032 | cram | 11.7 GB | ||
| EGAF50000093033 | cram | 11.4 GB | ||
| EGAF50000093034 | cram | 10.3 GB | ||
| EGAF50000093035 | cram | 11.7 GB | ||
| EGAF50000093036 | cram | 11.3 GB | ||
| EGAF50000093037 | cram | 12.1 GB | ||
| EGAF50000093038 | cram | 11.7 GB | ||
| EGAF50000093039 | cram | 12.5 GB | ||
| EGAF50000093040 | cram | 8.8 GB | ||
| EGAF50000093041 | cram | 10.7 GB | ||
| EGAF50000093042 | cram | 10.3 GB | ||
| EGAF50000093043 | cram | 13.2 GB | ||
| EGAF50000093044 | cram | 13.0 GB | ||
| EGAF50000093045 | cram | 12.1 GB | ||
| EGAF50000093046 | cram | 10.9 GB | ||
| EGAF50000093047 | cram | 10.3 GB | ||
| EGAF50000093048 | cram | 10.1 GB | ||
| EGAF50000093049 | cram | 11.6 GB | ||
| EGAF50000093050 | cram | 9.6 GB | ||
| 41 Files (439.7 GB) | ||||