Genomic and epigenomic study of Japanese renal cell carcinoma including WGS, RNA-seq, ATAC-seq, and methyl-seq

We performed whole-genomic and transcriptomic sequencing of more than 100 Japanese renal cell carcinoma (RCC) cases, including clear cell RCC, papillary RCC, chromophobe RCC, and TFE3-translocated RCC. In addition, we conducted epigenome sequencing analyses: the assay for transposase-accessible chromatin sequencing (ATAC-seq) and enzymatic methyl sequencing.

Type: Other
Archiver: European Genome-Phenome Archive (EGA)

4 Datasets 1 Publication

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001009866	whole genome sequencing data	Illumina NovaSeq 6000	512
EGAD00001009867	methyl-seq data 64 cases	Illumina NovaSeq 6000	128
EGAD00001009868	ATAC-seq data 72cases	Illumina HiSeq 2500	144
EGAD00001010003	RNA-seq data. 287 Japanese RCC cases.	Illumina HiSeq 2500	574

Publications	Citations
Genomic and epigenomic integrative subtypes of renal cell carcinoma in a Japanese cohort. Fukagawa A, Hama N, Totoki Y, Nakamura H, Arai Y, Saito-Adachi M, Maeshima A, Matsui Y, Yachida S, Ushiku T, Shibata T. Nat Commun 14: 2023 8383	0