Analysis of enhancer-promoter connectivity alterations - EGA European Genome-Phenome Archive

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001011135	This dataset contains ATAC-seq data performed in MM.1S cell line in ETOH (control) or Dexamethasone condition (Treatment)	Illumina HiSeq 2500	2
EGAD00001011136	This dataset gather ChIP-seq data produced by immunoprecipitating CTCF factor in own laboratory in MM.1S cell line in EtOH and Dex conditions. It also gather ChIP-seq dataset produced by external laboratory (Active Motif) for H3K27ac mark and GR transcription factor in same cell line and conditions ( MM.1S ETOH/Dex)	Illumina MiSeq unspecified	2
EGAD00001011137	This dataset gather all RNA-sequencing data in MM.1S cell line in control and Dex condition; both in 3 biological replicates	Illumina HiSeq 2500	2
EGAD00001011138	This dataset gather HiChIP data for H3K27ac mar in MM.1S cell line in control and Dex condition, both in two biological replicates	Illumina NovaSeq 6000	2
EGAD00001011139	This dataset gather scRNAseq data performed for MM.1S cell line in control and dex conditions at 4h and 24h	Illumina NovaSeq 6000	2
EGAD00001011140	This dataset gather scMultiomic data including RNA-seq and ATAC-seq in MM.1S in control and dex condition at 1h and 4h	Illumina NovaSeq 6000	2

Publications	Citations
Exploring the impact of dexamethasone on gene regulation in myeloma cells. Bessonneau-Gaborit V, Cruard J, Guerin-Charbonnel C, Derrien J, Alberge JB, Douillard E, Devic M, Deshayes S, Campion L, Westermann F, Moreau P, Herrmann C, Bourdon J, Magrangeas F, Minvielle S. Life Sci Alliance 6: 2023 e202302195	0